Real-space imaging of the band topology of transition metal dichalcogenides

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Nature Physics (2026)Cite this article The topological properties of Bloch bands are tied to the structure of their electronic wavefunctions within the unit cell of a crystal. Here we show that scanning tunnelling microscopy and spectroscopy measurements on the prototypical transition metal dichalcogenide semiconductor WSe2 can be used to determine the location of the Wannier centre of the valence band. Using site-specific substitutional doping, we determine the position of the atomic sites within real-space scanning tunnelling microscopy images, and establish that the maximum electronic density of states at the corner of the Brillouin zone lies between the atoms. By contrast, the maximum density of states at the Brillouin zone centre is at the atomic sites. This signifies that WSe2 is a topologically obstructed atomic insulator, which cannot be adiabatically transformed into a trivial atomic limit, constituting direct experimental evidence of this phase of matter.This is a preview of subscription content, access via your institution Access Nature and 54 other Nature Portfolio journals Get Nature+, our best-value online-access subscription $32.99 / 30 days cancel any timeSubscribe to this journal Receive 12 print issues and online access $259.00 per yearonly $21.58 per issueBuy this articleUSD 39.95Prices may be subject to local taxes which are calculated during checkoutSource data are provided with this paper. All other data that support the findings of this study are available from the corresponding authors upon requestHoffmann, R. How chemistry and physics meet in the solid state. Angew. Chem. Int. Ed. 26, 846–878 (1987).Article Google Scholar Blount, E. I. in Solid State Physics Vol. 13 (eds Seitz, F. & Turnbull, D.) 305–373 (Academic Press, 1962).Bradlyn, B. et al. Topological quantum chemistry. Nature 547, 298–305 (2017).Article ADS Google Scholar Cano, J. et al. Building blocks of topological quantum chemistry: elementary band representations. Phys. Rev. B 97, 035139 (2018).Article ADS Google Scholar Vanderbilt, D. & King-Smith, R. D. Electric polarization as a bulk quantity and its relation to surface charge. Phys. Rev. B 48, 4442 (1993).Article ADS Google Scholar Khalaf, E., Benalcazar, W. A., Hughes, T. L. & Queiroz, R. Boundary-obstructed topological phases. Phys. Rev. Res. 3, 013239 (2021).Article Google Scholar Cano, J. & Bradlyn, B. Band representations and topological quantum chemistry. Annu. Rev. Condens. Matter Phys. 12, 225–246 (2021).Article ADS Google Scholar Xu, Y. et al. Filling-enforced obstructed atomic insulators. Phys. Rev. B 109, 165139 (2024).Article ADS Google Scholar Bauernfeind, M. et al. Design and realization of topological Dirac fermions on a triangular lattice. Nat. Commun. 12, 5396 (2021).Article ADS Google Scholar Villanova, J. W. et al. Ghost states and surface structures of the charge density wave kagome metal ScV6Sn6. Appl. Surf. Sci. 665, 160190 (2024).Article Google Scholar Nag, P. K. et al. Pomeranchuk instability induced by an emergent higher-order Van Hove singularity on the distorted kagome surface of Co3Sn2S2. Preprint at http://arxiv.org/abs/2410.01994 (2024).Liu, S. et al. Two-step flux synthesis of ultrapure transition-metal dichalcogenides. ACS Nano 17, 16587 (2023).Article Google Scholar Wang, L. et al. One-dimensional electrical contact to a two-dimensional material. Science 342, 614–617 (2013).Article ADS Google Scholar Stupian, G. W. & Leung, M. S. Imaging of MoS2 by scanning tunneling microscopy. Appl. Phys. Lett. 51, 1560 (1987).Article ADS Google Scholar Weimer, M., Kramar, J., Bai, C. & Baldeschwieler, J. D. Tunneling microscopy of 2H-MoS2: a compound semiconductor surface. Phys. Rev. B 37, 4292 (1988).Article ADS Google Scholar Whangbo, M.-H. et al. On the correlation between the scanning tunneling microscopy image imperfections and point defects of layered chalcogenides 2H-MX2 (M = Mo, W; X = S, Se). Surf. Sci. 326, 311–326 (1995).Article ADS Google Scholar Feenstra, R. M., Stroscio, J. A., Tersoff, J. & Fein, A. P. Atom-selective imaging of the GaAs(110) surface. Phys. Rev. Lett. 58, 1192 (1987).Article ADS Google Scholar Altibelli, A., Joachim, C. & Sautet, P. Interpretation of STM images: the MoS2 surface. Surf. Sci. 367, 209–220 (1996).Article ADS Google Scholar Kobayashi, K. & Yamauchi, J. Scanning tunneling microscopy image of transition-metal-dichalcogenide surfaces. Surf. Sci. 357-358, 317–321 (1996).Article ADS Google Scholar Barja, S. et al. Identifying substitutional oxygen as a prolific point defect in monolayer transition metal dichalcogenides. Nat. Commun. 10, 3382 (2019).Article ADS Google Scholar Zhang, C. et al. Probing critical point energies of transition metal dichalcogenides: surprising indirect gap of single layer WSe2. Nano Lett. 15, 6494 (2015).Article ADS Google Scholar Stroscio, J. A. & Kaiser, W. J. in Methods of Experimental Physics Vol. 27 (Academic Press, 1993).Liu, G.-B., Shan, W.-Y., Yao, Y., Yao, W. & Xiao, D. Three-band tight-binding model for monolayers of group-VIB transition metal dichalcogenides. Phys. Rev. B 88, 085433 (2013).Article ADS Google Scholar Zeng, J., Liu, H., Jiang, H., Sun, Q.-F. & Xie, X. C. Multiorbital model reveals a second-order topological insulator in 1H transition metal dichalcogenides. Phys. Rev. B 104, L161108 (2021).Article ADS Google Scholar Jung, J. & Kim, Y.-H. Hidden breathing kagome topology in hexagonal transition metal dichalcogenides. Phys. Rev. B 105, 085138 (2022).Article ADS Google Scholar Queiroz, R., Ilan, R., Song, Z., Bernevig, B. A. & Stern, A. Ring states in topological materials. Preprint at http://arxiv.org/abs/2406.03529 (2024).Teo, J. C. & Kane, C. L. Topological defects and gapless modes in insulators and superconductors. Phys. Rev. B 82, 115120 (2010).Article ADS Google Scholar Ran, Y., Zhang, Y. & Vishwanath, A. One-dimensional topologically protected modes in topological insulators with lattice dislocations. Nat. Phys. 5, 298–303 (2009).Article Google Scholar Slager, R.-J., Rademaker, L., Zaanen, J. & Balents, L. Impurity-bound states and Green’s function zeros as local signatures of topology. Phys. Rev. B 92, 085126 (2015).Article ADS Google Scholar Juričić, V., Mesaros, A., Slager, R.-J. & Zaanen, J. Universal probes of two-dimensional topological insulators: dislocation and π flux. Phys. Rev. Lett. 108, 106403 (2012).Article ADS Google Scholar Dutreix, C. et al. Measuring the Berry phase of graphene from wavefront dislocations in Friedel oscillations. Nature 574, 219–222 (2019).Article ADS Google Scholar Komissarov, I., Holder, T. & Queiroz, R. The quantum geometric origin of capacitance in insulators. Nat. Commun. 15, 4621 (2024).Article ADS Google Scholar Zotev, P. G. et al. Nanophotonics with multilayer van der Waals materials. Nat. Photon. 19, 788–802 (2025).Article ADS Google Scholar Zhang, C. et al. Engineering point-defect states in monolayer WSe2. ACS Nano 13, 1595 (2019).
Google Scholar Lin, Y.-C. et al. Realizing large-scale, electronic-grade two-dimensional semiconductors. ACS Nano 12, 965–975 (2018).Article Google Scholar Trainer, D. J. et al. Visualization of defect induced in-gap states in monolayer MoS2. npj 2D Mater. Appl. 6, 13 (2022).Article Google Scholar Vaidya, S., Ghorashi, A., Christensen, T., Rechtsman, M. C. & Benalcazar, W. A. Topological phases of photonic crystals under crystalline symmetries. Phys. Rev. B 108, 085116 (2023).Article ADS Google Scholar Peterson, C. W., Benalcazar, W. A., Hughes, T. L. & Bahl, G. A quantized microwave quadrupole insulator with topologically protected corner states. Nature 555, 346–350 (2018).Article ADS Google Scholar Kim, H.-R. et al. Multipolar lasing modes from topological corner states. Nat. Commun. 11, 5758 (2020).Article ADS Google Scholar Li, Y. et al. Polarization-orthogonal nondegenerate plasmonic higher-order topological states. Phys. Rev. Lett. 130, 213603 (2023).Article ADS Google Scholar Proctor, M., Blanco de Paz, M., Bercioux, D., García-Etxarri, A. & Arroyo Huidobro, P. Higher-order topology in plasmonic kagome lattices. Appl. Phys. Lett. 118, 091105 (2021).Lee, H. J. & Ho, W. Single-bond formation and characterization with a scanning tunneling microscope. Science 286, 1719 (1999).Article ADS Google Scholar Gross, L. et al. High-resolution molecular orbital imaging using a p-wave STM tip. Phys. Rev. Lett. 107, 086101 (2011).Article ADS Google Scholar Weiss, P. S. & Eigler, D. M. Site dependence of the apparent shape of a molecule in scanning tunneling micoscope images: benzene on Pt(111). Phys. Rev. Lett. 71, 3139 (1993).Article ADS Google Scholar Sierda, E. et al. Quantum simulator to emulate lower-dimensional molecular structure. Science 380, 1048 (2023).Article ADS Google Scholar Gardenier, T. S. et al. p orbital flat band and Dirac cone in the electronic honeycomb lattice. ACS Nano 14, 13638 (2020).Article Google Scholar Tromp, R. M., Hamers, R. J. & Demuth, J. E. Quantum states and atomic structure of silicon surfaces. Science 234, 304–309 (1986).Article ADS Google Scholar Zhang, F. et al. Experimental signature of layer skyrmions and implications for band topology in twisted WSe2 bilayers. Nat. Phys. 21, 1217–1223 (2025).Article Google Scholar Thompson, E. et al. Microscopic signatures of topology in twisted MoTe2. Nat. Phys. 21, 1224–1230 (2025).Article Google Scholar Ligthart, R. et al. Wannier center spectroscopy to identify boundary-obstructed topological insulators. Phys. Rev. Res. 7, 012076 (2025).Article Google Scholar Eck, P. et al. Real-space obstruction in quantum spin Hall insulators. Phys. Rev. B 106, 195143 (2022).Article ADS Google Scholar Nayak, A. K. et al. Resolving the topological classification of bismuth with topological defects. Sci. Adv. 5, eaax6996 (2019).Article ADS Google Scholar Ugeda, M. M. et al. Observation of topologically protected states at crystalline phase boundaries in single-layer WSe2. Nat. Commun. 9, 3401 (2018).Article ADS Google Scholar Yin, J.-X., Pan, S. H. & Zahid Hasan, M. Probing topological quantum matter with scanning tunnelling microscopy. Nat. Rev. Phys. 3, 249 (2021).Article Google Scholar Jeon, S. & Oh, M. Resolving exotic quantum states using scanning tunneling microscopy. Curr. Appl. Phys. 68, 58 (2024).Article ADS Google Scholar Călugăru, D. et al. Observation of an obstructed atomic band in a transition metal dichalcogenide. Nat. Phys. https://doi.org/10.1038/s41567-026-03196-5 (2026).Kresse, G. & Furthmüller, J. Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set. Phys. Rev. B 54, 11169 (1996).Article ADS Google Scholar Kresse, G. & Furthmüller, J. Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set. Comput. Mater. Sci. 6, 15 (1996).Article Google Scholar Perdew, J. P. et al. Restoring the density-gradient expansion for exchange in solids and surfaces. Phys. Rev. Lett. 100, 136406 (2008).Article ADS Google Scholar Mostofi, A. A. et al. An updated version of wannier90: a tool for obtaining maximally-localised Wannier functions. Comput. Phys. Commun. 185, 2309 (2014).Article ADS Google Scholar Giannozzi, P. et al. QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials. J. Phys. Condens. Matter 21, 395502 (2009).Article Google Scholar Hamann, D. R. Optimised norm-conserving Vanderbilt pseudopotentials. Phys. Rev. B 88, 085117 (2013).Article ADS Google Scholar Perdew, J. P., Burke, K. & Ernzerhof, M. Generalized gradient approximation made simple. Phys. Rev. Lett. 77, 3865 (1996).Article ADS Google Scholar Otero-de-la Roza, A., Blanco, M. A., Pendás, A. M. & Luaña, V. Critic: a new program for the topological analysis of solid-state electron densities. Comput. Phys. Commun. 180, 157–166 (2009).Article ADS MathSciNet Google Scholar Otero-de-la Roza, A., Johnson, E. R. & Luaña, V. Critic2: a program for real-space analysis of quantum chemical interactions in solids. Comput. Phys. Commun. 185, 1007 (2014).Article ADS Google Scholar Ingham, J., Jiang, Y.-X., Hasan, M. Z. & Scammell, H. D. Group theory method for extracting order parameters from scanning tunneling microscopy data. Preprint at http://arxiv.org/abs/2508.10206 (2025).Sobral, J. A., Obernauer, S., Turkel, S., Pasupathy, A. N. & Scheurer, M. S. Machine learning the microscopic form of nematic order in twisted double-bilayer graphene. Nat. Commun. 14, 5012 (2023).Article ADS Google Scholar Kreisel, A. et al. Quasi-particle interference of the Van Hove singularity in Sr2RuO4. npj Quantum Mater. 6, 100 (2021).Article ADS Google Scholar Download referencesJ.I. thanks D. Muñoz-Segovia for helpful discussions. J.I. and M.H. give special thanks to J. Balgley for discussions that initiated the project. This work was primarily supported by the NSF MRSEC program at Columbia through the Center for Precision-Assembled Quantum Materials (DMR-2011738). J.I., D.K. and R.Q. acknowledge support by grant NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). A.N.P. acknowledges support from the Air Force Office of Scientific Research via award number FA9550-21-1-0378. R.Q. and J.I. are further supported by NSF Career award number DMR-2340394. D.K. is supported by the Abrahams postdoctoral fellowship of the Center for Materials Theory, Rutgers University, and the Zuckerman STEM fellowship. D.R. and B.B. were supported by NSF Career award number DMR-2338984. Theoretical calculations (B.H. and D.Y.Q.) were supported by the National Science Foundation Division of Chemistry under award number CHE-2412412. Their calculations used resources of the National Energy Research Scientific Computing (NERSC), a Department of Energy, Office of Science User Facility, operated under contract number DE-AC02-05CH11231, under award numbers BES-ERCAP-0031507 and BES-ERCAP-0027380 and the Texas Advanced Computing Center (TACC) at The University of Texas at Austin.Department of Physics, Columbia University, New York, NY, USAMadisen Holbrook, Julian Ingham, Luca Nashabeh, Raquel Queiroz & Abhay N. PasupathyDepartment of Physics and Astronomy, Center for Materials Theory, Rutgers University, Piscataway, NJ, USADaniel KaplanDepartment of Applied Physics and Applied Mathematics, Columbia University, New York, NY, USALuke N. Holtzman & Katayun BarmakDepartment of Chemistry, University of Wisconsin, Madison, WI, USABrenna BiermanDepartment of Materials Science, Yale University, New Haven, CT, USABowen Hou & Diana Y. QiuDepartment of Chemistry, Columbia University, New York, NY, USANicholas Olsen, Yiliu Li & Xiaoyang ZhuDepartment of Mechanical Engineering, Columbia University, New York, NY, USASong Liu & James C. HoneDepartment of Materials Science and Engineering, University of Wisconsin, Madison, WI, USADaniel RhodesDepartment of Physics, University of Wisconsin, Madison, WI, USADaniel RhodesCondensed Matter Physics and Materials Science Division, Brookhaven National Laboratory, Upton, NY, USAAbhay N. PasupathySearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarSearch author on:PubMed Google ScholarJ.I. and R.Q. conceived the theoretical premise and M.H. and A.N.P. conceived the experiment. M.H. carried out the STM and STS measurements with L.N. under the supervision of A.N.P. D.K. performed the density functional theory calculations of the band structure and local density of states. J.I. performed the tight-binding calculations of band structure and local density of states. First-principles defect simulations were performed by B.H. under the supervision of D.Y.Q. L.N.H., S.L. and B.B. synthesized the bulk TMD crystals under the supervision of D.R., K.B. and J.C.H. The samples were exfoliated/stacked by N.O. and Y.L. under the supervision of X.Z. M.H. and A.N.P. analysed the STM data. M.H., J.I., D.K., A.N.P. and R.Q. wrote the paper with contributions from all authors.Correspondence to Raquel Queiroz or Abhay N. Pasupathy.The authors declare no competing interests.Nature Physics thanks Sathwik Bharadwaj and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.(a) Image to the left shows a flattened current image acquired at -1.9 V near the Γ point, with the raw current shown in grayscale. As the tip is lowered toward the sample (blue profile), the charge density position shifts as the tunnelling becomes dominated by states at K. (b) At -1.4 V, where only K states contribute, the charge density remains unchanged with tip height. Scale bars are 0.5 nm.Source dataSupplementary Figs. 1–13 and Sections 1–10.Calculated DFT band structure data for monolayer WSe2 for Fig. 1a and statistical source data for Fig. 1d,e.Calculated DFT band structure data for monolayer NbSe2 (Fig. 4a).Source data for Extended Data Fig. 1a,b.Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.Reprints and permissionsHolbrook, M., Ingham, J., Kaplan, D. et al. Real-space imaging of the band topology of transition metal dichalcogenides. Nat. Phys. (2026). https://doi.org/10.1038/s41567-026-03197-4Download citationReceived: 27 January 2025Accepted: 28 January 2026Published: 31 March 2026Version of record: 31 March 2026DOI: https://doi.org/10.1038/s41567-026-03197-4Anyone you share the following link with will be able to read this content:Sorry, a shareable link is not currently available for this article. Provided by the Springer Nature SharedIt content-sharing initiative
